If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 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'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 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'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ), 'gf_id' => 'HOM05D000668', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000668' ), 'data_identifier' => 'HOM05D000668', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000668', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '855', 'num_species' => '90' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31270' => 'bna', 'A03p34150' => 'bna', 'A03p39870' => 'bna', 'A03p49330' => 'bna', 'A05p11800' => 'bna', 'A05p32970' => 'bna', 'A07p08570' => 'bna', 'A07p11380' => 'bna', 'A08p06510' => 'bna', 'A08p25710' => 'bna', 'A08p37540' => 'bna', 'A09p05400' => 'bna', 'A09p37800' => 'bna', 'A10p01560' => 'bna', 'Aa31LG10G6310' => 'aar', 'Aa31LG11G9450' => 'aar', 'Aa31LG1G9660' => 'aar', 'Aa31LG5G15910' => 'aar', 'Aa31LG6G10100' => 'aar', 'Aa31LG8G10380' => 'aar', 'Aa31LG8G3710' => 'aar', 'Aa31LG9G13690' => 'aar', 'Aa31LG9G3620' => 'aar', 'Actinidia05645' => 'ach', 'Actinidia16557' => 'ach', 'Actinidia24836' => 'ach', 'Actinidia26128' => 'ach', 'Actinidia35563' => 'ach', 'Actinidia39467' => 'ach', 'Ah.04g153540' => 'amhyb', 'Ah.04g161110' => 'amhyb', 'Ah.06g189750' => 'amhyb', 'Ah.06g189760' => 'amhyb', 'AL1G12340' => 'aly', 'AL1G41820' => 'aly', 'AL3G16090' => 'aly', 'AL3G29440' => 'aly', 'AL3G38720' => 'aly', 'AL4G29480' => 'aly', 'AL6G39280' => 'aly', 'AL7G24240' => 'aly', 'AL7G39500' => 'aly', 'AL7G42550' => 'aly', 'Aqoxy1G02379' => 'aox', 'Aqoxy2G02986' => 'aox', 'Aqoxy2G03923' => 'aox', 'Aqoxy5G00719' => 'aox', 'arahy.Tifrunner.gnm1.ann1.5C4XQ1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE87VC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0F1MQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DUTG24' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FIQ4J0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ID4K19' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JCRS0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JK52R2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JM09FW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K757UK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M5N13L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MI29ZX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NHS9X5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NSAU2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TD4C26' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U98S4V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XX9KI1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z1A7TI' => 'arhy', 'AT1G02900' => 'ath', 'AT1G28270' => 'ath', 'AT2G33775' => 'ath', 'AT3G05490' => 'ath', 'AT3G16570' => 'ath', 'AT3G23805' => 'ath', 'AT4G13950' => 'ath', 'AT4G15800' => 'ath', 'ATR0561G193' => 'atr', 'ATR0605G076' => 'atr', 'ATR0796G076' => 'atr', 'ATR0807G002' => 'atr', 'Atru.chr10.1860' => 'acertr', 'Atru.chr2.264' => 'acertr', 'Atru.chr2.27' => 'acertr', 'Atru.chr4.1574' => 'acertr', 'Atru.chr4.2834' => 'acertr', 'Atru.chr5.1183' => 'acertr', 'AUR62000768' => 'cqu', 'AUR62000769' => 'cqu', 'AUR62005200' => 'cqu', 'AUR62005201' => 'cqu', 'AUR62008615' => 'cqu', 'AUR62015303' => 'cqu', 'AUR62018549' => 'cqu', 'AUR62020870' => 'cqu', 'AUR62032002' => 'cqu', 'AUR62032736' => 'cqu', 'AUR62033167' => 'cqu', 'AUR62040735' => 'cqu', 'BcaB02g10591' => 'bca', 'BcaB03g12115' => 'bca', 'BcaB03g13498' => 'bca', 'BcaB03g13941' => 'bca', 'BcaB03g15752' => 'bca', 'BcaB03g15753' => 'bca', 'BcaB04g17635' => 'bca', 'BcaB04g18905' => 'bca', 'BcaB04g19263' => 'bca', 'BcaB04g19264' => 'bca', 'BcaB04g20421' => 'bca', 'BcaB06g25758' => 'bca', 'BcaB06g25759' => 'bca', 'BcaB06g26542' => 'bca', 'BcaB07g32437' => 'bca', 'BcaC01g00033' => 'bca', 'BcaC01g03814' => 'bca', 'BcaC02g11454' => 'bca', 'BcaC04g23641' => 'bca', 'BcaC05g24574' => 'bca', 'BcaC05g26832' => 'bca', 'BcaC05g28868' => 'bca', 'BcaC05g30117' => 'bca', 'BcaC05g30163' => 'bca', 'BcaC06g32964' => 'bca', 'BcaC06g33447' => 'bca', 'BcaC06g33448' => 'bca', 'BcaC06g35346' => 'bca', 'BcaC06g35573' => 'bca', 'BcaC07g36985' => 'bca', 'BcaC07g36987' => 'bca', 'BcaC09g47828' => 'bca', 'BNapus_Darmor_BZH_scaffold_114p00060' => 'bna', 'BolC1t03935H' => 'bol', 'BolC1t05693H' => 'bol', 'BolC3t16435H' => 'bol', 'BolC3t17114H' => 'bol', 'BolC3t19750H' => 'bol', 'BolC4t23109H' => 'bol', 'BolC4t27801H' => 'bol', 'BolC5t28935H' => 'bol', 'BolC5t31427H' => 'bol', 'BolC5t33726H' => 'bol', 'BolC5t34832H' => 'bol', 'BolC7t41833H' => 'bol', 'BolC7t42221H' => 'bol', 'BolC7t45267H' => 'bol', 'BolC8t46833H' => 'bol', 'BolC8t47599H' => 'bol', 'BolC9t53514H' => 'bol', 'BraA01t03251Z' => 'bra', 'BraA03t12589Z' => 'bra', 'BraA03t13135Z' => 'bra', 'BraA03t14034Z' => 'bra', 'BraA05t19071Z' => 'bra', 'BraA05t20123Z' => 'bra', 'BraA05t22122Z' => 'bra', 'BraA05t23036Z' => 'bra', 'BraA07t28646Z' => 'bra', 'BraA07t28926Z' => 'bra', 'BraA08t32664Z' => 'bra', 'BraA08t34521Z' => 'bra', 'BraA08t35651Z' => 'bra', 'BraA09t36178Z' => 'bra', 'BraA09t39292Z' => 'bra', 'BraA10t42431Z' => 'bra', 'BraSC132t45502Z' => 'bra', 'C01p39840' => 'bna', 'C03p41540' => 'bna', 'C03p48340' => 'bna', 'C03p74990' => 'bna', 'C04p15350' => 'bna', 'C04p63270' => 'bna', 'C05p01560' => 'bna', 'C05p27080' => 'bna', 'C05p49740' => 'bna', 'C05p61740' => 'bna', 'C07p13380' => 'bna', 'C07p17160' => 'bna', 'C07p47400' => 'bna', 'C08p00320' => 'bna', 'C08p07550' => 'bna', 'C09p05880' => 'bna', 'CAN.G1081.3' => 'can', 'CAN.G128.125' => 'can', 'CAN.G162.48' => 'can', 'CAN.G162.49' => 'can', 'CAN.G185.13' => 'can', 'CAN.G209.38' => 'can', 'CAN.G213.12' => 'can', 'CAN.G339.33' => 'can', 'CAN.G665.20' => 'can', 'CAN.G767.16' => 'can', 'CANSAT21G0480' => 'cansat', 'CANSAT25G0871' => 'cansat', 'CANSAT35G1029' => 'cansat', 'CANSAT54G2300' => 'cansat', 'CANSAT78G0305' => 'cansat', 'CANSAT78G0834' => 'cansat', 'CARHR002250' => 'chi', 'CARHR027760' => 'chi', 'CARHR079880' => 'chi', 'CARHR091780' => 'chi', 'CARHR099800' => 'chi', 'CARHR127850' => 'chi', 'CARHR219860' => 'chi', 'CARHR236090' => 'chi', 'CARHR290300' => 'chi', 'Carub.0001s0203' => 'cru', 'Carub.0001s2671' => 'cru', 'Carub.0003s0478' => 'cru', 'Carub.0003s1630' => 'cru', 'Carub.0003s2411' => 'cru', 'Carub.0004s1542' => 'cru', 'Carub.0006s2487' => 'cru', 'Carub.0007s1239' => 'cru', 'Carub.0007s2586' => 'cru', 'Carub.0007s2852' => 'cru', 'Carub.0033s0004' => 'cru', 'Ca_05802_v3' => 'car', 'Ca_09146_v3' => 'car', 'Ca_10128_v3' => 'car', 'Ca_16410_v3' => 'car', 'Ca_21495_v3' => 'car', 'Cc01_g20640' => 'ccan', 'Cc02_g13520' => 'ccan', 'Cc03_g01950' => 'ccan', 'Cc03_g12050' => 'ccan', 'Cc05_g11910' => 'ccan', 'CDE01G0653' => 'cde', 'CDE10G0178' => 'cde', 'CDE12G0954' => 'cde', 'Cfa000487' => 'cfa', 'Cfa005951' => 'cfa', 'Cfa006625' => 'cfa', 'Cfa014964' => 'cfa', 'Cfa015383' => 'cfa', 'Ciclev10002897m.g' => 'ccl', 'Ciclev10006201m.g' => 'ccl', 'Ciclev10006214m.g' => 'ccl', 'Ciclev10018198m.g' => 'ccl', 'Ciclev10023750m.g' => 'ccl', 'Ciclev10030160m.g' => 'ccl', 'Ciclev10030349m.g' => 'ccl', 'CiPaw.01G116500' => 'cil', 'CiPaw.01G148800' => 'cil', 'CiPaw.02G155000' => 'cil', 'CiPaw.07G021200' => 'cil', 'CiPaw.07G106300' => 'cil', 'CiPaw.08G097500' => 'cil', 'CiPaw.08G162200' => 'cil', 'CiPaw.10G050000' => 'cil', 'ClCG00G001980' => 'cla', 'ClCG00G002610' => 'cla', 'ClCG02G015440' => 'cla', 'ClCG05G003080' => 'cla', 'ClCG06G005140' => 'cla', 'ClCG06G005350' => 'cla', 'ClCG09G006060' => 'cla', 'ClCG10G010660' => 'cla', 'COL.COLO4_10515' => 'col', 'COL.COLO4_13872' => 'col', 'COL.COLO4_23376' => 'col', 'COL.COLO4_31453' => 'col', 'COL.COLO4_31454' => 'col', 'COL.COLO4_36337' => 'col', 'Cpa.g.sc157.45' => 'cpa', 'Cpa.g.sc16.170' => 'cpa', 'Cpa.g.sc48.92' => 'cpa', 'Cpa.g.sc9.207' => 'cpa', 'CsaV3_2G006630' => 'csa', 'CsaV3_3G010700' => 'csa', 'CsaV3_4G000650' => 'csa', 'CsaV3_6G017190' => 'csa', 'CsaV3_6G017390' => 'csa', 'CsaV3_6G041870' => 'csa', 'CSS0005879' => 'camsi', 'CSS0014221' => 'camsi', 'CSS0015175' => 'camsi', 'CSS0021052' => 'camsi', 'CSS0034135' => 'camsi', 'CSS0034518' => 'camsi', 'CSS0039658' => 'camsi', 'CSS0048936' => 'camsi', 'DCAR_002812' => 'dca', 'DCAR_003353' => 'dca', 'DCAR_004066' => 'dca', 'DCAR_004067' => 'dca', 'DCAR_005807' => 'dca', 'DCAR_008033' => 'dca', 'DCAR_018328' => 'dca', 'DCAR_022149' => 'dca', 'DCAR_024569' => 'dca', 'DCAR_024897' => 'dca', 'DCAR_026655' => 'dca', 'DCAR_026796' => 'dca', 'DCAR_028064' => 'dca', 'DCAR_030529' => 'dca', 'Dinv17323' => 'din', 'Dinv19718' => 'din', 'Dinv20184' => 'din', 'Dinv29741' => 'din', 'Dinv30805' => 'din', 'Dinv38165' => 'din', 'Dinv40341' => 'din', 'Dinv40573' => 'din', 'Dinv44382' => 'din', 'Duzib052G0337' => 'dzi', 'Duzib052G0676' => 'dzi', 'Duzib109G0001' => 'dzi', 'Duzib109G0002' => 'dzi', 'Duzib128G0017' => 'dzi', 'Duzib132G0963' => 'dzi', 'Duzib133G0092' => 'dzi', 'Duzib138G0285' => 'dzi', 'Duzib151G0725' => 'dzi', 'Duzib151G0798' => 'dzi', 'Duzib160G0756' => 'dzi', 'Duzib177G0542' => 'dzi', 'Duzib192G0789' => 'dzi', 'Duzib211G0580' => 'dzi', 'Duzib212G0446' => 'dzi', 'Duzib212G0565' => 'dzi', 'Duzib212G0760' => 'dzi', 'Duzib235G0068' => 'dzi', 'Duzib248G0509' => 'dzi', 'Duzib268G1841' => 'dzi', 'ECA236G3542' => 'eca', 'ECA240G0467' => 'eca', 'ECA240G1238' => 'eca', 'EL10Ac3g06595' => 'bvu', 'EL10Ac4g09919' => 'bvu', 'EL10Ac4g09920' => 'bvu', 'EL10Ac7g17442' => 'bvu', 'Eucgr.B01311' => 'egr', 'Eucgr.B01916' => 'egr', 'Eucgr.D00610' => 'egr', 'Eucgr.E03266' => 'egr', 'Eucgr.H00024' => 'egr', 'Eucgr.H01161' => 'egr', 'Eucgr.H02676' => 'egr', 'Eucgr.H04532' => 'egr', 'Eucgr.K03354' => 'egr', 'Eucgr.K03464' => 'egr', 'FAN02G3643' => 'fan', 'FAN05G3000' => 'fan', 'FAN07G0423' => 'fan', 'FAN07G1440' => 'fan', 'FAN11G3682' => 'fan', 'FAN11G3903' => 'fan', 'FAN12G2803' => 'fan', 'FAN12G4126' => 'fan', 'FAN14G5330' => 'fan', 'FAN15G2429' => 'fan', 'FAN16G0026' => 'fan', 'FAN16G0140' => 'fan', 'FAN17G2655' => 'fan', 'FAN17G2729' => 'fan', 'FAN20G0886' => 'fan', 'FAN21G0697' => 'fan', 'FAN21G3854' => 'fan', 'FAN24G0777' => 'fan', 'FAN24G3138' => 'fan', 'FAN25G0450' => 'fan', 'FAN27G0851' => 'fan', 'FvH4_2g13590' => 'fve', 'FvH4_2g25351' => 'fve', 'FvH4_3g09010' => 'fve', 'FvH4_3g09020' => 'fve', 'FvH4_4g13250' => 'fve', 'FvH4_4g18001' => 'fve', 'FvH4_6g06520' => 'fve', 'Glyma.03G213000' => 'gma', 'Glyma.03G236000' => 'gma', 'Glyma.05G151900' => 'gma', 'Glyma.07G198100' => 'gma', 'Glyma.07G247500' => 'gma', 'Glyma.08G108700' => 'gma', 'Glyma.10G152000' => 'gma', 'Glyma.11G254600' => 'gma', 'Glyma.13G178300' => 'gma', 'Glyma.15G075300' => 'gma', 'Glyma.17G026400' => 'gma', 'Glyma.18G002500' => 'gma', 'Glyma.18G175401' => 'gma', 'Glyma.19G209900' => 'gma', 'Glyma.19G233700' => 'gma', 'Glyma.20G236400' => 'gma', 'Gohir.A01G032800' => 'ghi', 'Gohir.A02G018700' => 'ghi', 'Gohir.A02G049200' => 'ghi', 'Gohir.A04G102900' => 'ghi', 'Gohir.A06G128800' => 'ghi', 'Gohir.A06G128802' => 'ghi', 'Gohir.A06G128900' => 'ghi', 'Gohir.A06G210700' => 'ghi', 'Gohir.A06G210800' => 'ghi', 'Gohir.A06G210900' => 'ghi', 'Gohir.A08G043000' => 'ghi', 'Gohir.A08G117550' => 'ghi', 'Gohir.A08G208700' => 'ghi', 'Gohir.A10G128400' => 'ghi', 'Gohir.A10G163900' => 'ghi', 'Gohir.A11G115300' => 'ghi', 'Gohir.A11G267800' => 'ghi', 'Gohir.D01G023481' => 'ghi', 'Gohir.D02G022100' => 'ghi', 'Gohir.D02G054300' => 'ghi', 'Gohir.D04G142100' => 'ghi', 'Gohir.D06G132700' => 'ghi', 'Gohir.D06G132900' => 'ghi', 'Gohir.D06G210200' => 'ghi', 'Gohir.D06G210300' => 'ghi', 'Gohir.D08G052800' => 'ghi', 'Gohir.D08G138501' => 'ghi', 'Gohir.D08G225600' => 'ghi', 'Gohir.D10G137500' => 'ghi', 'Gohir.D10G170300' => 'ghi', 'Gohir.D11G120300' => 'ghi', 'Gohir.D11G277700' => 'ghi', 'Gorai.002G028300' => 'gra', 'Gorai.004G052800' => 'gra', 'Gorai.004G142100' => 'gra', 'Gorai.004G239600' => 'gra', 'Gorai.005G027600' => 'gra', 'Gorai.005G060200' => 'gra', 'Gorai.007G129000' => 'gra', 'Gorai.007G299900' => 'gra', 'Gorai.010G154600' => 'gra', 'Gorai.010G154800' => 'gra', 'Gorai.010G256000' => 'gra', 'Gorai.010G256100' => 'gra', 'Gorai.011G152700' => 'gra', 'Gorai.011G190000' => 'gra', 'Gorai.012G127200' => 'gra', 'GSVIVG01017757001' => 'vvi', 'GSVIVG01027973001' => 'vvi', 'GSVIVG01031147001' => 'vvi', 'HanXRQChr01g0022141' => 'han', 'HanXRQChr02g0058471' => 'han', 'HanXRQChr03g0080731' => 'han', 'HanXRQChr04g0118061' => 'han', 'HanXRQChr06g0163881' => 'han', 'HanXRQChr07g0185581' => 'han', 'HanXRQChr09g0260481' => 'han', 'HanXRQChr12g0364141' => 'han', 'HanXRQChr13g0389201' => 'han', 'HanXRQChr13g0411301' => 'han', 'Haze_01205' => 'cav', 'Haze_04143' => 'cav', 'Haze_04895' => 'cav', 'Haze_06428' => 'cav', 'Haze_06430' => 'cav', 'Haze_11656' => 'cav', 'Hma1.2p1_0078F.1_g040560' => 'hma', 'Hma1.2p1_0208F.1_g088210' => 'hma', 'Hma1.2p1_0209F.1_g088620' => 'hma', 'Hma1.2p1_0319F.1_g123790' => 'hma', 'Hma1.2p1_0349F.1_g132070' => 'hma', 'Hma1.2p1_0691F.1_g204140' => 'hma', 'Hma1.2p1_0736F.1_g210720' => 'hma', 'Hma1.2p1_0736F.1_g210730' => 'hma', 'Hma1.2p1_1212F.1_g267290' => 'hma', 'Hma1.2p1_1286F.1_g273070' => 'hma', 'Hma1.2p1_1292F.1_g273690' => 'hma', 'Hma1.2p1_1407F.1_g281520' => 'hma', 'Hma1.2p1_2190F.1_g316680' => 'hma', 'Hma1.2p1_3290F.1_g334910' => 'hma', 'HPP92_002143' => 'vpl', 'HPP92_002854' => 'vpl', 'HPP92_003616' => 'vpl', 'HPP92_010696' => 'vpl', 'HPP92_017218' => 'vpl', 'HPP92_024049' => 'vpl', 'HPP92_024562' => 'vpl', 'Lalb_Chr02g0148131' => 'lal', 'Lalb_Chr04g0260681' => 'lal', 'Lalb_Chr06g0167711' => 'lal', 'Lalb_Chr07g0177711' => 'lal', 'Lalb_Chr08g0230471' => 'lal', 'Lalb_Chr09g0327681' => 'lal', 'Lalb_Chr12g0196571' => 'lal', 'Lalb_Chr13g0303591' => 'lal', 'Lalb_Chr14g0367031' => 'lal', 'Lalb_Chr15g0089761' => 'lal', 'Lalb_Chr16g0383861' => 'lal', 'Lalb_Chr18g0047141' => 'lal', 'Lalb_Chr18g0059541' => 'lal', 'Lalb_Chr20g0121771' => 'lal', 'Lalb_Chr20g0121781' => 'lal', 'Lalb_Chr24g0399921' => 'lal', 'Lj1g0013033' => 'lja', 'Lj1g0016255' => 'lja', 'Lj2g0009864' => 'lja', 'Lj2g0016288' => 'lja', 'Lj2g0017295' => 'lja', 'Lj3g0007476' => 'lja', 'Lj4g0020304' => 'lja', 'Lj4g0026721' => 'lja', 'Lj5g0010157' => 'lja', 'Lj6g0020725' => 'lja', 'Lj6g0025466' => 'lja', 'Lsat_1_v5_gn_1_70801' => 'lsa', 'Lsat_1_v5_gn_5_190460' => 'lsa', 'Lsat_1_v5_gn_5_53261' => 'lsa', 'Lsat_1_v5_gn_6_59080' => 'lsa', 'Lsat_1_v5_gn_7_104080' => 'lsa', 'Lsat_1_v5_gn_8_53380' => 'lsa', 'Lsat_1_v5_gn_9_97601' => 'lsa', 'Manes.01G217000' => 'mes', 'Manes.03G143800' => 'mes', 'Manes.03G194800' => 'mes', 'Manes.05G064300' => 'mes', 'Manes.08G118000' => 'mes', 'Manes.09G169900' => 'mes', 'Manes.14G142000' => 'mes', 'Manes.15G012500' => 'mes', 'Manes.15G057100' => 'mes', 'MBI06_g20685_MAGBIO' => 'mbi', 'MBI06_g23080_MAGBIO' => 'mbi', 'MBI07_g08882_MAGBIO' => 'mbi', 'MBI07_g30202_MAGBIO' => 'mbi', 'MBI18_g21828_MAGBIO' => 'mbi', 'MBI19_g29224_MAGBIO' => 'mbi', 'MBI19_g32717_MAGBIO' => 'mbi', 'MD00G1116200' => 'mdo', 'MD03G1171400' => 'mdo', 'MD03G1284900' => 'mdo', 'MD04G1017300' => 'mdo', 'MD04G1201100' => 'mdo', 'MD09G1245200' => 'mdo', 'MD10G1292800' => 'mdo', 'MD10G1292900' => 'mdo', 'MD11G1304400' => 'mdo', 'MD12G1213600' => 'mdo', 'MD13G1168800' => 'mdo', 'MD13G1281800' => 'mdo', 'MD16G1024600' => 'mdo', 'MD16G1025200' => 'mdo', 'MD16G1025500' => 'mdo', 'MD16G1169200' => 'mdo', 'MD17G1237000' => 'mdo', 'Medtr3g084350' => 'mtr', 'Medtr4g088685' => 'mtr', 'Medtr4g119860' => 'mtr', 'Medtr6g060260' => 'mtr', 'Medtr7g108600' => 'mtr', 'Medtr7g113080' => 'mtr', 'MELO3C004224.2' => 'cme', 'MELO3C008034.2' => 'cme', 'MELO3C016020.2' => 'cme', 'MELO3C017971.2' => 'cme', 'MELO3C021331.2' => 'cme', 'MELO3C021354.2' => 'cme', 'Migut.D00195' => 'egut', 'Migut.M00180' => 'egut', 'Migut.M00797' => 'egut', 'Migut.N00422' => 'egut', 'Migut.N01498' => 'egut', 'Migut.N02079' => 'egut', 'Migut.O00419' => 'egut', 'MSTRG.12900' => 'ama', 'MSTRG.14353' => 'ama', 'MSTRG.17415' => 'ama', 'MSTRG.18168' => 'ama', 'MSTRG.20420' => 'ama', 'MSTRG.27981' => 'ama', 'MSTRG.5110' => 'ama', 'MSTRG.6803' => 'ama', 'MSTRG.9793' => 'ama', 'Nitab4.5_0000191g0100' => 'nta', 'Nitab4.5_0000619g0010' => 'nta', 'Nitab4.5_0001148g0010' => 'nta', 'Nitab4.5_0001241g0090' => 'nta', 'Nitab4.5_0001272g0010' => 'nta', 'Nitab4.5_0001574g0150' => 'nta', 'Nitab4.5_0002344g0010' => 'nta', 'Nitab4.5_0002873g0010' => 'nta', 'Nitab4.5_0003546g0030' => 'nta', 'Nitab4.5_0005474g0040' => 'nta', 'Nitab4.5_0008171g0030' => 'nta', 'Nitab4.5_0008329g0040' => 'nta', 'Nitab4.5_0011791g0010' => 'nta', 'Nn1g02004' => 'nnu', 'Nn1g06864' => 'nnu', 'Nn1g08167' => 'nnu', 'Nn3g20094' => 'nnu', 'Nn3g20709' => 'nnu', 'Nn3g20711' => 'nnu', 'Nn3g21435' => 'nnu', 'Nn4g25851' => 'nnu', 'Nn4g25852' => 'nnu', 'Nn5g30454' => 'nnu', 'Nn8g41035' => 'nnu', 'Oeu002929.1' => 'oeu', 'Oeu010916.1' => 'oeu', 'Oeu012116.1' => 'oeu', 'Oeu019312.1' => 'oeu', 'Oeu030342.1' => 'oeu', 'Oeu043356.1' => 'oeu', 'Oeu043435.1' => 'oeu', 'Oeu048347.1' => 'oeu', 'Oeu051073.1' => 'oeu', 'Oeu051076.1' => 'oeu', 'Oeu056429.1' => 'oeu', 'Os01g0201400' => 'osa', 'Os01g0257100' => 'osa', 'Os01g0357900' => 'osa', 'Os01g0358100' => 'osa', 'Os01g0932950' => 'osa', 'Os02g0670500' => 'osa', 'Os05g0203000' => 'osa', 'Os11g0456000' => 'osa', 'Os12g0541700' => 'osa', 'Os12g0542000' => 'osa', 'Peaxi162Scf00008g00075' => 'pax', 'Peaxi162Scf00037g00921' => 'pax', 'Peaxi162Scf00067g00252' => 'pax', 'Peaxi162Scf00071g00616' => 'pax', 'Peaxi162Scf00363g00049' => 'pax', 'PGR004G0623' => 'pgr', 'PGR004G2829' => 'pgr', 'PGR031G2049' => 'pgr', 'PGR031G3251' => 'pgr', 'PGR042G3488' => 'pgr', 'PGR042G3613' => 'pgr', 'PGR042G3930' => 'pgr', 'PGR044G1871' => 'pgr', 'PGR083G2443' => 'pgr', 'PGR119G0509' => 'pgr', 'PGR119G0950' => 'pgr', 'PGSC0003DMG400001194' => 'stu', 'PGSC0003DMG400004661' => 'stu', 'PGSC0003DMG400011369' => 'stu', 'PGSC0003DMG400012411' => 'stu', 'PGSC0003DMG400013733' => 'stu', 'PGSC0003DMG400015363' => 'stu', 'PGSC0003DMG400019902' => 'stu', 'PGSC0003DMG400024749' => 'stu', 'Phvul.001G205701' => 'pvu', 'Phvul.001G266400' => 'pvu', 'Phvul.002G229400' => 'pvu', 'Phvul.003G105300' => 'pvu', 'Phvul.006G089900' => 'pvu', 'Phvul.007G197000' => 'pvu', 'Phvul.008G122900' => 'pvu', 'Potri.001G320700' => 'ptr', 'Potri.004G044900' => 'ptr', 'Potri.004G045000' => 'ptr', 'Potri.005G025800' => 'ptr', 'Potri.008G208200' => 'ptr', 'Potri.013G017400' => 'ptr', 'Potri.014G131800' => 'ptr', 'Potri.017G059500' => 'ptr', 'Prupe.1G137000' => 'ppe', 'Prupe.1G165400' => 'ppe', 'Prupe.3G141000' => 'ppe', 'Prupe.4G049000' => 'ppe', 'Prupe.6G321200' => 'ppe', 'Prupe.8G258000' => 'ppe', 'Psat0s4314g0080' => 'psa', 'Psat3g022600' => 'psa', 'Psat4g026000' => 'psa', 'Psat5g099640' => 'psa', 'Psat7g114440' => 'psa', 'Psat7g114480' => 'psa', 'PSO017G4680' => 'pso', 'PSO063G0019' => 'pso', 'PSO151G0171' => 'pso', 'PSO210G0193' => 'pso', 'PSO210G2986' => 'pso', 'PSO210G3991' => 'pso', 'PSO210G4451' => 'pso', 'PSO675G4942' => 'pso', 'PSO732G0053' => 'pso', 'PSO832G1033' => 'pso', 'PSO832G2762' => 'pso', 'QL03p021055' => 'qlo', 'QL03p021840' => 'qlo', 'QL05p041191' => 'qlo', 'QL06p008855' => 'qlo', 'QL10p053329' => 'qlo', 'QL10p054530' => 'qlo', 'QL11p018315' => 'qlo', 'QL12p027130' => 'qlo', 'RcHm_v2.0_Chr3g0455671' => 'rch', 'RcHm_v2.0_Chr4g0413501' => 'rch', 'RcHm_v2.0_Chr4g0422211' => 'rch', 'RcHm_v2.0_Chr5g0008651' => 'rch', 'RcHm_v2.0_Chr5g0008661' => 'rch', 'RcHm_v2.0_Chr5g0008671' => 'rch', 'RcHm_v2.0_Chr6g0275191' => 'rch', 'RcHm_v2.0_Chr6g0275201' => 'rch', 'RcHm_v2.0_Chr6g0293531' => 'rch', 'Rhsim01G0283800' => 'rsi', 'Rhsim02G0131000' => 'rsi', 'Rhsim02G0131900' => 'rsi', 'Rhsim05G0139100' => 'rsi', 'Rhsim07G0187600' => 'rsi', 'Rhsim09G0060500' => 'rsi', 'Rhsim13G0012600' => 'rsi', 'Rhsim13G0012700' => 'rsi', 'Rhsim13G0179200' => 'rsi', 'RhsimUnG0168400' => 'rsi', 'Sabra04G0028000' => 'sbr', 'Sabra04G0028100' => 'sbr', 'Sabra05G0031300' => 'sbr', 'Sabra08G0153600' => 'sbr', 'Sabra13G0016400' => 'sbr', 'Sabra13G0020400' => 'sbr', 'Sabra14G0098000' => 'sbr', 'Sabra16G0203200' => 'sbr', 'Sabra17G0053100' => 'sbr', 'SalBow3G0941' => 'sbo', 'SalBow6G6888' => 'sbo', 'SalBow7G1520' => 'sbo', 'SalBow7G3677' => 'sbo', 'Sc05g0004210' => 'sci', 'Sc09g0002960' => 'sci', 'Sc15g0002640' => 'sci', 'Sc16g0008620' => 'sci', 'Sc16g0008630' => 'sci', 'Sc16g0008640' => 'sci', 'Sc19g0005310' => 'sci', 'Sc22g0002060' => 'sci', 'Sed0002437' => 'sed', 'Sed0006997' => 'sed', 'Sed0012753' => 'sed', 'Sed0013472' => 'sed', 'Sed0014038' => 'sed', 'Sed0020132' => 'sed', 'Sed0020473' => 'sed', 'Sed0026350' => 'sed', 'Sed0027554' => 'sed', 'SEGI_07192' => 'sgi', 'SEGI_33666' => 'sgi', 'SEGI_37000' => 'sgi', 'SGA_v2.0_scaffold172G38990' => 'sas', 'SGA_v2.0_scaffold1G00378' => 'sas', 'SGA_v2.0_scaffold2G01406' => 'sas', 'SGA_v2.0_scaffold34G13812' => 'sas', 'SGA_v2.0_scaffold36G14400' => 'sas', 'SGA_v2.0_scaffold49G18297' => 'sas', 'SGA_v2.0_scaffold70G23679' => 'sas', 'SGA_v2.0_scaffold73G24252' => 'sas', 'SHI01703' => 'shi', 'SHI18107' => 'shi', 'SHI23641' => 'shi', 'Solyc01g067900.3' => 'sly', 'Solyc01g099520.3' => 'sly', 'Solyc02g014290.1' => 'sly', 'Solyc07g063030.3' => 'sly', 'Solyc09g074890.1' => 'sly', 'Solyc12g005460.2' => 'sly', 'Solyc12g013895.1' => 'sly', 'Solyc12g098510.1' => 'sly', 'Sopen01g029860' => 'spe', 'Sopen01g043030' => 'spe', 'Sopen02g003440' => 'spe', 'Sopen07g031220' => 'spe', 'Sopen09g029710' => 'spe', 'Sopen12g001450' => 'spe', 'Sopen12g007220' => 'spe', 'Sopen12g033290' => 'spe', 'Sp1g01900' => 'spa', 'Sp1g24470' => 'spa', 'Sp2g20870' => 'spa', 'Sp3g04320' => 'spa', 'Sp3g14900' => 'spa', 'Sp3g21510' => 'spa', 'Sp4g16140' => 'spa', 'Sp7g11750' => 'spa', 'Sp7g14170' => 'spa', 'TAR362G0455' => 'tar', 'TAR365G0715' => 'tar', 'TAR624G0049' => 'tar', 'TAR626G1460' => 'tar', 'TAR627G0254' => 'tar', 'TAR627G1157' => 'tar', 'TAR633G1015' => 'tar', 'TAR633G2807' => 'tar', 'TAR636G0737' => 'tar', 'THA.LOC104801268' => 'tha', 'THA.LOC104802573' => 'tha', 'THA.LOC104802797' => 'tha', 'THA.LOC104804058' => 'tha', 'THA.LOC104808690' => 'tha', 'THA.LOC104812611' => 'tha', 'THA.LOC104818714' => 'tha', 'THA.LOC104820262' => 'tha', 'THA.LOC104820548' => 'tha', 'THA.LOC104821723' => 'tha', 'Thecc.01G297000' => 'tca', 'Thecc.02G182000' => 'tca', 'Thecc.04G194600' => 'tca', 'Thecc.04G284500' => 'tca', 'Thecc.05G312600' => 'tca', 'Thecc.06G185300' => 'tca', 'Thhalv10002729m.g' => 'esa', 'Thhalv10005147m.g' => 'esa', 'Thhalv10009124m.g' => 'esa', 'Thhalv10009158m.g' => 'esa', 'Thhalv10017458m.g' => 'esa', 'Thhalv10021739m.g' => 'esa', 'Thhalv10021783m.g' => 'esa', 'Thhalv10026579m.g' => 'esa', 'Thhalv10026600m.g' => 'esa', 'TPR.G16324' => 'tpr', 'TPR.G16495' => 'tpr', 'TPR.G25380' => 'tpr', 'TPR.G33206' => 'tpr', 'TPR.G39809' => 'tpr', 'TPR.G6464' => 'tpr', 'TPR.G9615' => 'tpr', 'TWI09G0853' => 'twi', 'TWI12G0335' => 'twi', 'TWI14G0096' => 'twi', 'TWI14G0362' => 'twi', 'TWI38G1881' => 'twi', 'TWI38G1967' => 'twi', 'TWI38G2155' => 'twi', 'TWI39G1094' => 'twi', 'TWI53G0565' => 'twi', 'TWI56G0658' => 'twi', 'TWI59G1053' => 'twi', 'TWI73G0867' => 'twi', 'TWI73G1240' => 'twi', 'unitig_0.g2313' => 'ugi', 'unitig_21.g20065' => 'ugi', 'unitig_26.g9525' => 'ugi', 'unitig_37.g12037' => 'ugi', 'unitig_52.g17385' => 'ugi', 'unitig_699.g19230' => 'ugi', 'unitig_699.g19248' => 'ugi', 'unitig_747.g21664' => 'ugi', 'unitig_749.g13529' => 'ugi', 'unitig_899.g15569' => 'ugi', 'unitig_92.g28200' => 'ugi', 'vmacro00435' => 'vma', 'vmacro02469' => 'vma', 'vmacro02470' => 'vma', 'VMungo0251G1295' => 'vmu', 'VMungo0540G0997' => 'vmu', 'VMungo0720G0131' => 'vmu', 'VMungo1383G1799' => 'vmu', 'VMungo1383G1911' => 'vmu', 'VMungo1383G2628' => 'vmu', 'Zm00001eb016580' => 'zma', 'Zm00001eb120660' => 'zma', 'Zm00001eb131590' => 'zma', 'Zm00001eb137580' => 'zma', 'Zm00001eb165690' => 'zma', 'Zm00001eb284020' => 'zma', 'Zm00001eb330370' => 'zma', 'Zm00001eb333490' => 'zma', 'Zm00001eb338050' => 'zma', 'Zm00001eb341250' => 'zma', 'Zm00001eb363520' => 'zma', 'Zm00001eb363530' => 'zma', 'Zm00001eb410350' => 'zma' ) $gf_id = 'HOM05D000668' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000668' ) $data_identifier = 'HOM05D000668' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 31, 'aar' => (int) 9, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 10, 'aox' => (int) 4, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 32, 'bol' => (int) 17, 'bra' => (int) 17, 'can' => (int) 10, 'cansat' => (int) 6, 'chi' => (int) 9, 'cru' => (int) 11, 'car' => (int) 5, 'ccan' => (int) 5, 'cde' => (int) 3, 'cfa' => (int) 5, 'ccl' => (int) 7, 'cil' => (int) 8, 'cla' => (int) 8, 'col' => (int) 6, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 14, 'din' => (int) 9, 'dzi' => (int) 20, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 10, 'fan' => (int) 21, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 32, 'gra' => (int) 15, 'vvi' => (int) 3, 'han' => (int) 10, 'cav' => (int) 6, 'hma' => (int) 14, 'vpl' => (int) 7, 'lal' => (int) 16, 'lja' => (int) 11, 'lsa' => (int) 7, 'mes' => (int) 9, 'mbi' => (int) 7, 'mdo' => (int) 17, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 7, 'ama' => (int) 9, 'nta' => (int) 13, 'nnu' => (int) 11, 'oeu' => (int) 11, 'osa' => (int) 10, 'pax' => (int) 5, 'pgr' => (int) 11, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppe' => (int) 6, 'psa' => (int) 6, 'pso' => (int) 11, 'qlo' => (int) 8, 'rch' => (int) 9, 'rsi' => (int) 10, 'sbr' => (int) 9, 'sbo' => (int) 4, 'sci' => (int) 8, 'sed' => (int) 9, 'sgi' => (int) 3, 'sas' => (int) 8, 'shi' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 9, 'tar' => (int) 9, 'tha' => (int) 10, 'tca' => (int) 6, 'esa' => (int) 9, 'tpr' => (int) 7, 'twi' => (int) 13, 'ugi' => (int) 11, 'vma' => (int) 3, 'vmu' => (int) 6, 'zma' => (int) 13 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410350' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1